Variant report

Variant	rs55771723
Chromosome Location	chr2:10961902-10961903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10958052..10959606-chr2:10959996..10962869,2	MCF-7	breast:
2	chr2:10951768..10957623-chr2:10961230..10967037,7	K562	blood:
3	chr2:10951471..10954573-chr2:10958000..10962008,6	MCF-7	breast:
4	chr2:10954765..10957047-chr2:10960412..10962709,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143870	Chromatin interaction
ENSG00000238962	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10197595	0.80[AFR][1000 genomes]
rs10200007	0.80[AFR][1000 genomes]
rs12463454	0.81[ASN][1000 genomes]
rs12471725	0.81[ASN][1000 genomes]
rs12471762	0.81[ASN][1000 genomes]
rs12474895	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12475790	0.81[ASN][1000 genomes]
rs12621237	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12623588	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13404780	0.80[AFR][1000 genomes]
rs13429247	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13431633	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13431852	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432104	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17456225	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357815	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357816	0.80[AFR][1000 genomes]
rs2884289	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55688940	0.91[ASN][1000 genomes]
rs55770944	0.91[ASN][1000 genomes]
rs55863332	0.88[ASN][1000 genomes]
rs55968911	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55975412	0.81[ASN][1000 genomes]
rs56025654	0.91[ASN][1000 genomes]
rs56121730	0.91[ASN][1000 genomes]
rs56141717	0.91[ASN][1000 genomes]
rs56162318	0.86[ASN][1000 genomes]
rs56260452	0.81[ASN][1000 genomes]
rs56263234	0.91[ASN][1000 genomes]
rs56268818	0.81[ASN][1000 genomes]
rs56321198	0.91[ASN][1000 genomes]
rs56344711	0.91[ASN][1000 genomes]
rs59737886	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779445	0.81[ASN][1000 genomes]
rs72779451	0.91[ASN][1000 genomes]
rs72779452	0.91[ASN][1000 genomes]
rs72779453	0.91[ASN][1000 genomes]
rs72779459	0.91[ASN][1000 genomes]
rs72779464	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779466	0.91[ASN][1000 genomes]
rs72779469	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779470	0.91[ASN][1000 genomes]
rs72779474	0.91[ASN][1000 genomes]
rs72779478	0.91[ASN][1000 genomes]
rs7571007	0.91[ASN][1000 genomes]
rs7576898	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7587453	0.91[ASN][1000 genomes]
rs7590368	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10953600-10968200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:10955400-10968600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:10960800-10962000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr2:10961200-10972400	Weak transcription	Right Atrium	heart
5	chr2:10961400-10968600	Weak transcription	Gastric	stomach
6	chr2:10961600-10962000	Enhancers	Stomach Mucosa	stomach

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