Variant report

Variant	rs13429247
Chromosome Location	chr2:10960529-10960530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10958052..10959606-chr2:10959996..10962869,2	MCF-7	breast:
2	chr2:10958613..10961518-chr2:10969004..10971574,2	K562	blood:
3	chr2:10951471..10954573-chr2:10958000..10962008,6	MCF-7	breast:
4	chr2:10954765..10957047-chr2:10960412..10962709,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143870	Chromatin interaction
ENSG00000238962	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10192112	0.82[AFR][1000 genomes]
rs10197595	0.88[LWK][hapmap];0.84[MKK][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs10200007	0.82[AFR][1000 genomes]
rs1198844	0.94[CHD][hapmap]
rs12463454	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12471725	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.81[ASN][1000 genomes]
rs12471762	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.81[ASN][1000 genomes]
rs12474895	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12475790	0.81[ASN][1000 genomes]
rs12621237	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12623588	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13404780	0.88[LWK][hapmap];0.84[MKK][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs13431633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13431852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365181	0.85[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs17455708	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17456225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357816	0.82[AFR][1000 genomes]
rs2884289	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3856465	0.95[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap]
rs55688940	0.91[ASN][1000 genomes]
rs55770944	0.91[ASN][1000 genomes]
rs55771723	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55863332	0.88[ASN][1000 genomes]
rs55968911	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55975412	0.81[ASN][1000 genomes]
rs56025654	0.91[ASN][1000 genomes]
rs56121730	0.91[ASN][1000 genomes]
rs56141717	0.91[ASN][1000 genomes]
rs56162318	0.86[ASN][1000 genomes]
rs56260452	0.81[ASN][1000 genomes]
rs56263234	0.91[ASN][1000 genomes]
rs56268818	0.81[ASN][1000 genomes]
rs56321198	0.91[ASN][1000 genomes]
rs56344711	0.91[ASN][1000 genomes]
rs59737886	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779445	0.81[ASN][1000 genomes]
rs72779451	0.91[ASN][1000 genomes]
rs72779452	0.91[ASN][1000 genomes]
rs72779453	0.91[ASN][1000 genomes]
rs72779459	0.91[ASN][1000 genomes]
rs72779464	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779466	0.91[ASN][1000 genomes]
rs72779469	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779470	0.91[ASN][1000 genomes]
rs72779474	0.91[ASN][1000 genomes]
rs72779478	0.91[ASN][1000 genomes]
rs7571007	0.91[ASN][1000 genomes]
rs7576898	1.00[CEU][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7587453	0.91[ASN][1000 genomes]
rs7590368	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10953600-10960800	Weak transcription	Brain Substantia Nigra	brain
2	chr2:10953600-10960800	Weak transcription	Left Ventricle	heart
3	chr2:10953600-10968200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:10953800-10960800	Weak transcription	Spleen	Spleen
5	chr2:10955000-10960600	Weak transcription	Stomach Mucosa	stomach
6	chr2:10955400-10968600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:10955600-10960800	Weak transcription	Adipose Nuclei	Adipose
8	chr2:10959600-10960800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr2:10960400-10961200	Enhancers	Right Atrium	heart

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