Variant report

Variant	rs13404780
Chromosome Location	chr2:10957034-10957035
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10951755..10953479-chr2:10956167..10958157,2	K562	blood:

Variant related genes	Relation type
ENSG00000143870	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10182400	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10192112	0.85[CEU][hapmap];0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197595	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10520049	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.92[EUR][1000 genomes]
rs11489	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11885932	0.87[EUR][1000 genomes]
rs12474895	0.85[AFR][1000 genomes]
rs12617247	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12617440	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12621237	0.84[AFR][1000 genomes]
rs12623588	0.88[LWK][hapmap];0.84[MKK][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs13429247	0.88[LWK][hapmap];0.84[MKK][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs13431633	0.82[AFR][1000 genomes]
rs13431852	0.82[AFR][1000 genomes]
rs13432104	0.82[AFR][1000 genomes]
rs1387568	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17364770	0.90[EUR][1000 genomes]
rs17364812	1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365015	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17365299	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455729	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455876	0.92[EUR][1000 genomes]
rs2357815	0.82[AFR][1000 genomes]
rs2357816	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2884289	0.88[LWK][hapmap];0.84[MKK][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs3856467	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771723	0.80[AFR][1000 genomes]
rs6714903	0.90[EUR][1000 genomes]
rs6718547	0.90[EUR][1000 genomes]
rs6722515	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6733037	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756520	1.00[CEU][hapmap];0.86[GIH][hapmap];0.88[EUR][1000 genomes]
rs73174526	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7561135	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7570179	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7576898	0.81[AFR][1000 genomes]
rs7590368	0.82[AFR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10953600-10957800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:10953600-10959200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:10953600-10960800	Weak transcription	Brain Substantia Nigra	brain
4	chr2:10953600-10960800	Weak transcription	Left Ventricle	heart
5	chr2:10953600-10968200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:10953800-10960800	Weak transcription	Spleen	Spleen
7	chr2:10955000-10960600	Weak transcription	Stomach Mucosa	stomach
8	chr2:10955200-10957400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:10955200-10958600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:10955400-10958800	Weak transcription	HUVEC	blood vessel
11	chr2:10955400-10968600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr2:10955600-10960800	Weak transcription	Adipose Nuclei	Adipose
13	chr2:10956800-10957600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr2:10957000-10957200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:10957000-10957200	Flanking Bivalent TSS/Enh	HepG2	liver
16	chr2:10957000-10957400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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