Variant report

Variant	rs6733037
Chromosome Location	chr2:10965208-10965209
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10949661..10951896-chr2:10963536..10966432,2	K562	blood:
2	chr2:10951768..10957623-chr2:10961230..10967037,7	K562	blood:
3	chr2:10868178..10870654-chr2:10962952..10965682,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143870	Chromatin interaction
ENSG00000238962	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10182400	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10192112	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197595	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200007	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10520049	0.86[EUR][1000 genomes]
rs11489	0.85[EUR][1000 genomes]
rs11885932	0.87[EUR][1000 genomes]
rs12617247	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12617440	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13404780	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1387568	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17364770	0.85[EUR][1000 genomes]
rs17364812	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365015	0.86[EUR][1000 genomes]
rs17365299	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455729	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455876	0.86[EUR][1000 genomes]
rs2357816	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3856467	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714903	0.85[EUR][1000 genomes]
rs6718547	0.85[EUR][1000 genomes]
rs6722515	0.86[EUR][1000 genomes]
rs6756520	0.82[EUR][1000 genomes]
rs73174526	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7561135	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7570179	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10953600-10968200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:10955400-10968600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:10961200-10972400	Weak transcription	Right Atrium	heart
4	chr2:10961400-10968600	Weak transcription	Gastric	stomach
5	chr2:10963600-10971800	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links