Variant report

Variant	rs7561135
Chromosome Location	chr2:10954130-10954131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:10951284-10955286	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:10829660..10832488-chr2:10951407..10954824,3	MCF-7	breast:
2	chr2:10951075..10954804-chr2:10970791..10972657,3	MCF-7	breast:
3	chr2:10952771..10956477-chr2:10972417..10975728,4	MCF-7	breast:
4	chr2:10829183..10831676-chr2:10953297..10956112,2	MCF-7	breast:

Variant related genes	Relation type
PDIA6	TF binding region
ENSG00000115761	Chromatin interaction
ENSG00000143870	Chromatin interaction
ENSG00000243819	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10182400	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10192112	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197595	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200007	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10520049	0.92[EUR][1000 genomes]
rs11489	0.90[EUR][1000 genomes]
rs11885932	0.87[EUR][1000 genomes]
rs12617247	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12617440	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13404780	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1387568	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17364770	0.90[EUR][1000 genomes]
rs17364812	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365015	0.92[EUR][1000 genomes]
rs17365299	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455729	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455876	0.92[EUR][1000 genomes]
rs2357816	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3856467	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714903	0.90[EUR][1000 genomes]
rs6718547	0.90[EUR][1000 genomes]
rs6722515	0.92[EUR][1000 genomes]
rs6733037	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756520	0.88[EUR][1000 genomes]
rs73174526	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7570055	0.86[AFR][1000 genomes]
rs7570179	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10953600-10954200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:10953600-10954400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:10953600-10954400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:10953600-10954400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:10953600-10954400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:10953600-10954400	Enhancers	Adipose Nuclei	Adipose
7	chr2:10953600-10954400	Enhancers	HUVEC	blood vessel
8	chr2:10953600-10954600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:10953600-10954600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:10953600-10954600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr2:10953600-10954600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr2:10953600-10954600	Enhancers	Primary hematopoietic stem cells	blood
13	chr2:10953600-10954600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr2:10953600-10954600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:10953600-10954600	Weak transcription	Liver	Liver
16	chr2:10953600-10954600	Weak transcription	Fetal Heart	heart
17	chr2:10953600-10954600	Weak transcription	Fetal Kidney	kidney
18	chr2:10953600-10954600	Weak transcription	Stomach Mucosa	stomach
19	chr2:10953600-10954600	Weak transcription	K562	blood
20	chr2:10953600-10954600	Weak transcription	NHDF-Ad	bronchial
21	chr2:10953600-10954800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr2:10953600-10954800	Enhancers	Fetal Intestine Small	intestine
23	chr2:10953600-10954800	Weak transcription	Right Atrium	heart
24	chr2:10953600-10954800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr2:10953600-10955000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr2:10953600-10955000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr2:10953600-10955000	Enhancers	Fetal Intestine Large	intestine
28	chr2:10953600-10955200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr2:10953600-10955200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr2:10953600-10955200	Enhancers	Placenta	Placenta
31	chr2:10953600-10955600	Enhancers	Fetal Muscle Leg	muscle
32	chr2:10953600-10957800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr2:10953600-10959200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:10953600-10960800	Weak transcription	Brain Substantia Nigra	brain
35	chr2:10953600-10960800	Weak transcription	Left Ventricle	heart
36	chr2:10953600-10968200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr2:10953800-10954200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr2:10953800-10954200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr2:10953800-10954200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr2:10953800-10954200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr2:10953800-10954200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr2:10953800-10954200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr2:10953800-10954200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr2:10953800-10954200	Weak transcription	A549	lung
45	chr2:10953800-10954200	Bivalent Enhancer	HepG2	liver
46	chr2:10953800-10954400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr2:10953800-10954600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr2:10953800-10954600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr2:10953800-10954800	Weak transcription	Brain Anterior Caudate	brain
50	chr2:10953800-10954800	Weak transcription	Brain Cingulate Gyrus	brain

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