Variant report

Variant	rs73174526
Chromosome Location	chr2:10969640-10969641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10182400	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10192112	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197595	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200007	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10520049	0.90[EUR][1000 genomes]
rs11489	0.89[EUR][1000 genomes]
rs11885932	0.91[EUR][1000 genomes]
rs12617247	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12617440	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13404780	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1387568	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17364770	0.89[EUR][1000 genomes]
rs17364812	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365015	0.90[EUR][1000 genomes]
rs17365299	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455729	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455876	0.90[EUR][1000 genomes]
rs2357816	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3856467	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714903	0.89[EUR][1000 genomes]
rs6718547	0.89[EUR][1000 genomes]
rs6722515	0.90[EUR][1000 genomes]
rs6733037	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756520	0.86[EUR][1000 genomes]
rs7561135	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7570179	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524969	chr2:10969564-10971017	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10961200-10972400	Weak transcription	Right Atrium	heart
2	chr2:10963600-10971800	Weak transcription	Brain Anterior Caudate	brain
3	chr2:10968200-10973000	Enhancers	Liver	Liver
4	chr2:10968200-10973200	Enhancers	Spleen	Spleen
5	chr2:10968400-10972400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:10968600-10971000	Enhancers	Gastric	stomach
7	chr2:10968800-10970200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:10968800-10972400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:10969000-10970800	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr2:10969200-10971000	Enhancers	Stomach Mucosa	stomach
11	chr2:10969400-10970600	Enhancers	Pancreas	Pancrea
12	chr2:10969600-10970400	Enhancers	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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