Variant report

Variant	rs10192112
Chromosome Location	chr2:10958948-10958949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10958052..10959606-chr2:10959996..10962869,2	MCF-7	breast:
2	chr2:10958613..10961518-chr2:10969004..10971574,2	K562	blood:
3	chr2:10951471..10954573-chr2:10958000..10962008,6	MCF-7	breast:
4	chr2:10849900..10852301-chr2:10958041..10960505,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143870	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10182400	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197595	0.85[CEU][hapmap];0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200007	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10520049	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs11489	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs11885932	0.86[EUR][1000 genomes]
rs12474895	0.84[AFR][1000 genomes]
rs12617247	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12617440	0.85[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12621237	0.83[AFR][1000 genomes]
rs12623588	0.83[AFR][1000 genomes]
rs13404780	0.85[CEU][hapmap];0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13429247	0.82[AFR][1000 genomes]
rs13431633	0.82[AFR][1000 genomes]
rs13431852	0.82[AFR][1000 genomes]
rs13432104	0.82[AFR][1000 genomes]
rs1387568	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17364770	0.89[EUR][1000 genomes]
rs17364812	0.85[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365015	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs17365299	0.85[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455729	0.85[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455876	0.90[EUR][1000 genomes]
rs2357815	0.82[AFR][1000 genomes]
rs2357816	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2884289	0.82[AFR][1000 genomes]
rs3856467	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714903	0.89[EUR][1000 genomes]
rs6718547	0.89[EUR][1000 genomes]
rs6722515	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs6733037	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756520	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs73174526	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7561135	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7570179	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7576898	0.82[AFR][1000 genomes]
rs7590368	0.82[AFR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10953600-10959200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:10953600-10960800	Weak transcription	Brain Substantia Nigra	brain
3	chr2:10953600-10960800	Weak transcription	Left Ventricle	heart
4	chr2:10953600-10968200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:10953800-10960800	Weak transcription	Spleen	Spleen
6	chr2:10955000-10960600	Weak transcription	Stomach Mucosa	stomach
7	chr2:10955400-10968600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:10955600-10960800	Weak transcription	Adipose Nuclei	Adipose
9	chr2:10957600-10959000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr2:10958800-10960200	Enhancers	HUVEC	blood vessel

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