Variant report

Variant	rs12474895
Chromosome Location	chr2:10957848-10957849
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr2:10957700-10957850	HCT-116	colon:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
2	RAD21	chr2:10957588-10957950	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr2:10957700-10957850	HFF-Myc	foreskin:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
4	CTCF	chr2:10957700-10957850	HEEpiC	esophagus:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
5	CTCF	chr2:10957700-10957850	WI-38	lung:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
6	CTCF	chr2:10957521-10957906	H1-hESC	embryonic stem cell:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
7	CTCF	chr2:10957547-10957880	IMR90	lung:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
8	CTCF	chr2:10957295-10958035	SK-N-SH	brain:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
9	CTCF	chr2:10957326-10957913	A549	lung:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
10	CTCF	chr2:10957509-10957906	MCF-7	breast:	n/a	chr2:10957786-10957795 chr2:10957702-10957711
11	RAD21	chr2:10957591-10957878	HepG2	liver:	n/a	n/a
12	CTCF	chr2:10957760-10957910	HCM	heart:	n/a	chr2:10957786-10957795
13	ZNF143	chr2:10957556-10957856	H1-hESC	embryonic stem cell:	n/a	n/a
14	CTCF	chr2:10957720-10957870	HAc	cerebellar:	n/a	chr2:10957786-10957795

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10951755..10953479-chr2:10956167..10958157,2	K562	blood:

Variant related genes	Relation type
PDIA6	TF binding region
RNU7-176P	TF binding region
ENSG00000143870	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10192112	0.84[AFR][1000 genomes]
rs10197595	0.85[AFR][1000 genomes]
rs10200007	0.85[AFR][1000 genomes]
rs12463454	0.91[ASN][1000 genomes]
rs12471725	0.91[ASN][1000 genomes]
rs12471762	0.91[ASN][1000 genomes]
rs12472302	0.81[ASN][1000 genomes]
rs12475790	0.91[ASN][1000 genomes]
rs12621237	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12623588	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13404780	0.85[AFR][1000 genomes]
rs13429247	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13431633	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13431852	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13432104	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17365181	0.81[ASN][1000 genomes]
rs17365209	0.81[ASN][1000 genomes]
rs17365216	0.81[ASN][1000 genomes]
rs17456162	0.81[ASN][1000 genomes]
rs17456225	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2306922	0.81[ASN][1000 genomes]
rs2357815	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2357816	0.85[AFR][1000 genomes]
rs2884289	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3856465	0.86[ASN][1000 genomes]
rs55648622	0.81[ASN][1000 genomes]
rs55688940	0.81[ASN][1000 genomes]
rs55770944	0.81[ASN][1000 genomes]
rs55771723	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55968911	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55975412	0.91[ASN][1000 genomes]
rs56025654	0.81[ASN][1000 genomes]
rs56093996	0.81[ASN][1000 genomes]
rs56121730	0.81[ASN][1000 genomes]
rs56140102	0.81[ASN][1000 genomes]
rs56141717	0.81[ASN][1000 genomes]
rs56147885	0.81[ASN][1000 genomes]
rs56162318	0.81[ASN][1000 genomes]
rs56260452	0.91[ASN][1000 genomes]
rs56263234	0.81[ASN][1000 genomes]
rs56264212	0.81[ASN][1000 genomes]
rs56268818	0.91[ASN][1000 genomes]
rs56321198	0.81[ASN][1000 genomes]
rs56344711	0.81[ASN][1000 genomes]
rs59737886	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72779425	0.81[ASN][1000 genomes]
rs72779433	0.81[ASN][1000 genomes]
rs72779445	0.91[ASN][1000 genomes]
rs72779451	0.81[ASN][1000 genomes]
rs72779452	0.81[ASN][1000 genomes]
rs72779453	0.81[ASN][1000 genomes]
rs72779459	0.81[ASN][1000 genomes]
rs72779464	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72779466	0.81[ASN][1000 genomes]
rs72779469	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72779470	0.81[ASN][1000 genomes]
rs72779474	0.81[ASN][1000 genomes]
rs72779478	0.81[ASN][1000 genomes]
rs7571007	0.81[ASN][1000 genomes]
rs7576898	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7587453	0.81[ASN][1000 genomes]
rs7590368	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10953600-10959200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:10953600-10960800	Weak transcription	Brain Substantia Nigra	brain
3	chr2:10953600-10960800	Weak transcription	Left Ventricle	heart
4	chr2:10953600-10968200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:10953800-10960800	Weak transcription	Spleen	Spleen
6	chr2:10955000-10960600	Weak transcription	Stomach Mucosa	stomach
7	chr2:10955200-10958600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:10955400-10958800	Weak transcription	HUVEC	blood vessel
9	chr2:10955400-10968600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:10955600-10960800	Weak transcription	Adipose Nuclei	Adipose
11	chr2:10957600-10959000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:10957800-10958000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr2:10957800-10958000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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