Variant report

Variant	rs56344711
Chromosome Location	chr2:10969688-10969689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10968492..10971242-chr2:10972416..10974163,2	MCF-7	breast:
2	chr2:10958613..10961518-chr2:10969004..10971574,2	K562	blood:
3	chr2:10968173..10970876-chr2:11621344..11624039,2	MCF-7	breast:
4	chr2:10951152..10953579-chr2:10968229..10970049,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143870	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12463454	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12471725	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12471762	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12472302	0.83[AMR][1000 genomes]
rs12474895	0.81[ASN][1000 genomes]
rs12475790	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12621237	0.81[ASN][1000 genomes]
rs12623588	0.81[ASN][1000 genomes]
rs13429247	0.91[ASN][1000 genomes]
rs13431633	0.91[ASN][1000 genomes]
rs13431852	0.91[ASN][1000 genomes]
rs13432104	0.91[ASN][1000 genomes]
rs17365216	0.83[AMR][1000 genomes]
rs17456162	0.83[AMR][1000 genomes]
rs17456225	0.91[ASN][1000 genomes]
rs2306922	0.83[AMR][1000 genomes]
rs2357815	0.91[ASN][1000 genomes]
rs2884289	0.91[ASN][1000 genomes]
rs55688940	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55770944	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771723	0.91[ASN][1000 genomes]
rs55863332	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55968911	0.91[ASN][1000 genomes]
rs55975412	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56025654	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56121730	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56140102	0.83[AMR][1000 genomes]
rs56141717	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56162318	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56260452	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56263234	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56268818	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56321198	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59737886	0.91[ASN][1000 genomes]
rs72779425	0.83[AMR][1000 genomes]
rs72779433	0.83[AMR][1000 genomes]
rs72779445	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72779451	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779452	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779453	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779459	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779464	0.91[ASN][1000 genomes]
rs72779466	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779469	0.91[ASN][1000 genomes]
rs72779470	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779474	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72779478	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7571007	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7576898	0.86[ASN][1000 genomes]
rs7587453	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7590368	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524969	chr2:10969564-10971017	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10961200-10972400	Weak transcription	Right Atrium	heart
2	chr2:10963600-10971800	Weak transcription	Brain Anterior Caudate	brain
3	chr2:10968200-10973000	Enhancers	Liver	Liver
4	chr2:10968200-10973200	Enhancers	Spleen	Spleen
5	chr2:10968400-10972400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:10968600-10971000	Enhancers	Gastric	stomach
7	chr2:10968800-10970200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:10968800-10972400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:10969000-10970800	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr2:10969200-10971000	Enhancers	Stomach Mucosa	stomach
11	chr2:10969400-10970600	Enhancers	Pancreas	Pancrea
12	chr2:10969600-10970400	Enhancers	Rectal Mucosa Donor 29	rectum

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