Variant report

Variant	rs17460146
Chromosome Location	chr9:73256353-73256354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17462924	1.00[AFR][1000 genomes]
rs17463328	1.00[AFR][1000 genomes]
rs17463426	1.00[AFR][1000 genomes]
rs17470402	1.00[AFR][1000 genomes]
rs17470784	1.00[AFR][1000 genomes]
rs17470826	1.00[AFR][1000 genomes]
rs17555728	1.00[AFR][1000 genomes]
rs17556102	1.00[AFR][1000 genomes]
rs17556199	1.00[AFR][1000 genomes]
rs41308880	1.00[AFR][1000 genomes]
rs62545301	1.00[AFR][1000 genomes]
rs62545305	1.00[AFR][1000 genomes]
rs62545306	1.00[AFR][1000 genomes]
rs62545337	1.00[AFR][1000 genomes]
rs62545992	1.00[AFR][1000 genomes]
rs62545996	1.00[AFR][1000 genomes]
rs62547568	1.00[AFR][1000 genomes]
rs62547569	1.00[AFR][1000 genomes]
rs62547570	1.00[AFR][1000 genomes]
rs62547572	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73251200-73256400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:73255000-73256800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:73255400-73256400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr9:73255400-73256600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:73255400-73256800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:73255400-73257000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr9:73255400-73257000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr9:73255400-73257200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:73255400-73257600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:73255600-73256600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:73255600-73256600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:73255600-73256800	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:73255600-73257000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:73255600-73257600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr9:73255800-73256800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr9:73256000-73256400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:73256000-73256400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:73256000-73256400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:73256200-73256400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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