Variant report

Variant	rs62545996
Chromosome Location	chr9:73429131-73429132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:73429128-73429157	Gliobla	brain:	n/a	n/a

Variant related genes	Relation type
MIR204	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs17460146	1.00[AFR][1000 genomes]
rs17462924	1.00[AFR][1000 genomes]
rs17463001	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17463279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17463300	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17463328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17463426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17470402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17470784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17470826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17554439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17554479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17555728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17556102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17556199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35881499	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41308880	1.00[AFR][1000 genomes]
rs62545301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62545305	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62545306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62545337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62545982	0.90[EUR][1000 genomes]
rs62545984	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62545985	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62545989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62545990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62545991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62545992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62545993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62545994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62545997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62545998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62545999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62546000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62547568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62547569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62547570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62547572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62547573	1.00[EUR][1000 genomes]
rs718445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs718446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73411200-73437400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:73411800-73433400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73418200-73444000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:73418200-73447400	Weak transcription	Fetal Kidney	kidney
5	chr9:73427600-73483400	Weak transcription	Aorta	Aorta

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