Variant report

Variant	rs17556199
Chromosome Location	chr9:73477269-73477270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs17460146	1.00[AFR][1000 genomes]
rs17462924	1.00[AFR][1000 genomes]
rs17463001	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17463279	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17463300	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17463328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17463426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17470402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17470784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17470826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17554439	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17554479	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17555728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17556102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35881499	1.00[AMR][1000 genomes]
rs41308880	1.00[AFR][1000 genomes]
rs62545301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62545305	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62545306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62545337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62545984	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62545985	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62545989	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62545990	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62545991	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62545992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62545993	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62545994	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62545996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62545997	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62545998	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62545999	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62546000	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62547568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62547569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62547570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62547572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62547573	0.84[EUR][1000 genomes]
rs718445	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs718446	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
2	chr9:73450600-73477600	Weak transcription	Ovary	ovary
3	chr9:73455600-73480600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:73457200-73485200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:73457800-73480600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:73461400-73482000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:73466200-73483000	Weak transcription	Fetal Heart	heart
8	chr9:73473600-73481800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr9:73475600-73477800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:73475600-73481800	Weak transcription	Fetal Kidney	kidney
11	chr9:73476200-73478200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr9:73476400-73479400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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