Variant report

Variant	rs17463300
Chromosome Location	chr9:73431016-73431017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10868909	1.00[YRI][hapmap]
rs17463001	0.97[EUR][1000 genomes]
rs17463279	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17463328	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17463426	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17470402	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17470784	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17470826	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17554439	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17554479	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17555728	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17556102	0.87[AMR][1000 genomes]
rs17556199	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35881499	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62545301	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62545305	0.90[EUR][1000 genomes]
rs62545306	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62545337	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62545982	0.88[EUR][1000 genomes]
rs62545984	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs62545985	0.97[EUR][1000 genomes]
rs62545989	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62545990	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62545991	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62545992	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62545993	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62545994	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62545996	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62545997	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62545998	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62545999	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62546000	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62547568	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62547569	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62547570	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62547572	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62547573	0.97[EUR][1000 genomes]
rs718445	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs718446	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73411200-73437400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:73411800-73433400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73418200-73444000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:73418200-73447400	Weak transcription	Fetal Kidney	kidney
5	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
6	chr9:73429400-73438400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:73429600-73440000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:73430200-73432200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:73430800-73432400	Enhancers	Fetal Heart	heart
10	chr9:73430800-73437800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr9:73431000-73431600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:73431000-73432600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links