Variant report

Variant	rs17461007
Chromosome Location	chr1:113982988-113982989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:113976925..113979950-chr1:113981310..113983206,3	MCF-7	breast:
2	chr1:113931462..113933712-chr1:113981460..113984569,3	MCF-7	breast:
3	chr1:113963718..113965605-chr1:113982352..113983894,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000081026	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11102629	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs11102646	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11578447	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11579386	0.87[CEU][hapmap]
rs12117465	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12117919	0.93[EUR][1000 genomes]
rs12119281	1.00[EUR][1000 genomes]
rs12125741	1.00[EUR][1000 genomes]
rs12127683	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12130729	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12130763	1.00[EUR][1000 genomes]
rs12131115	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12134802	0.89[EUR][1000 genomes]
rs12135714	0.89[EUR][1000 genomes]
rs12144505	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12145834	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17031640	0.87[CEU][hapmap]
rs17031645	0.87[CEU][hapmap]
rs17031648	0.87[CEU][hapmap]
rs17448063	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17461231	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17507884	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1936931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2359415	1.00[EUR][1000 genomes]
rs55710846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6537788	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6671518	0.87[CEU][hapmap]
rs6696459	0.87[CEU][hapmap]
rs7514186	0.87[CEU][hapmap]
rs7528311	0.87[CEU][hapmap]
rs7533429	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7555259	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427719	chr1:113570229-114078388	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:113940200-113987000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:113966800-113986600	Weak transcription	Fetal Intestine Small	intestine
3	chr1:113970000-113986600	Weak transcription	Esophagus	oesophagus
4	chr1:113981000-113986600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:113981000-113986600	Weak transcription	Aorta	Aorta
6	chr1:113981200-113986800	Weak transcription	Psoas Muscle	Psoas
7	chr1:113981400-113986600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr1:113981400-113986800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:113981600-113983400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:113981600-113983800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr1:113981800-113983200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:113981800-113986800	Weak transcription	Pancreas	Pancrea
13	chr1:113982000-113983200	Weak transcription	Stomach Mucosa	stomach
14	chr1:113982000-113983800	Weak transcription	Gastric	stomach
15	chr1:113982200-113983400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr1:113982200-113983800	Enhancers	A549	lung
17	chr1:113982200-113986600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr1:113982200-113987400	Weak transcription	Fetal Intestine Large	intestine

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