Variant report

Variant	rs7514186
Chromosome Location	chr1:114091883-114091884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:114089317..114091954-chr1:114097454..114100252,3	MCF-7	breast:
2	chr1:114084981..114088872-chr1:114091176..114094977,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11102629	0.87[CEU][hapmap]
rs11102646	0.87[CEU][hapmap]
rs11577235	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11578447	0.87[CEU][hapmap]
rs11579386	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12117465	0.87[CEU][hapmap]
rs12130729	0.87[CEU][hapmap]
rs12131115	0.87[CEU][hapmap]
rs12144505	0.87[CEU][hapmap]
rs12145834	0.85[CEU][hapmap]
rs17031640	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17031645	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17031648	1.00[CEU][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17448063	1.00[CEU][hapmap]
rs17461007	0.87[CEU][hapmap]
rs17461231	0.87[CEU][hapmap]
rs17507884	0.87[CEU][hapmap]
rs2359410	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56092022	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6537788	0.87[CEU][hapmap]
rs6663791	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6671518	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6696459	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7528311	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7533429	0.87[CEU][hapmap]
rs7553181	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7555259	1.00[CEU][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437013	chr1:114065955-114129092	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv947128	chr1:114088844-114122533	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114072200-114095800	Weak transcription	Aorta	Aorta
2	chr1:114082600-114100400	Weak transcription	Fetal Kidney	kidney
3	chr1:114083200-114099800	Weak transcription	Pancreas	Pancrea
4	chr1:114083400-114095200	Weak transcription	Liver	Liver
5	chr1:114083400-114100000	Weak transcription	Ovary	ovary
6	chr1:114083400-114110000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr1:114084000-114092000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:114084800-114095200	Weak transcription	Fetal Intestine Large	intestine
9	chr1:114084800-114095600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:114085000-114092400	Weak transcription	Fetal Intestine Small	intestine
11	chr1:114085600-114093600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:114085600-114094000	Weak transcription	HMEC	breast
13	chr1:114085600-114094200	Weak transcription	NHDF-Ad	bronchial
14	chr1:114085600-114101800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:114088200-114102000	Weak transcription	Colon Smooth Muscle	Colon
16	chr1:114088600-114099600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:114088600-114101000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr1:114088600-114109800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:114088800-114093800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:114088800-114094200	Weak transcription	NHEK	skin
21	chr1:114090400-114093000	Weak transcription	HepG2	liver
22	chr1:114090400-114099800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:114090800-114093600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr1:114091000-114093600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr1:114091000-114099800	Weak transcription	Left Ventricle	heart
26	chr1:114091200-114093600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr1:114091200-114093600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr1:114091200-114101800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr1:114091600-114093600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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