Variant report

Variant	rs7553181
Chromosome Location	chr1:114107836-114107837
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11577235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11579386	0.91[EUR][1000 genomes]
rs17031640	0.93[EUR][1000 genomes]
rs17031645	0.93[EUR][1000 genomes]
rs17031648	0.84[EUR][1000 genomes]
rs2359410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35955172	0.89[AFR][1000 genomes]
rs56092022	0.91[EUR][1000 genomes]
rs6663791	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6671518	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6673379	0.86[AFR][1000 genomes]
rs6696459	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7514186	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7528311	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7545980	0.86[AFR][1000 genomes]
rs7547536	0.89[AFR][1000 genomes]
rs7554422	0.89[AFR][1000 genomes]
rs7555259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437013	chr1:114065955-114129092	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv947128	chr1:114088844-114122533	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114083400-114110000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr1:114088600-114109800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:114094800-114138400	Weak transcription	NHDF-Ad	bronchial
4	chr1:114095600-114108200	Weak transcription	Primary T cells from cord blood	blood
5	chr1:114096400-114108800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr1:114100200-114127600	Weak transcription	Ovary	ovary
7	chr1:114100600-114108200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:114100600-114108800	Weak transcription	Fetal Lung	lung
9	chr1:114100600-114112600	Weak transcription	Esophagus	oesophagus
10	chr1:114100600-114118200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:114100600-114118600	Weak transcription	Lung	lung
12	chr1:114100600-114118800	Weak transcription	Pancreas	Pancrea
13	chr1:114100600-114140200	Weak transcription	Left Ventricle	heart
14	chr1:114100600-114173400	Weak transcription	Gastric	stomach
15	chr1:114100800-114109600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr1:114101000-114112600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:114105600-114109600	Weak transcription	Right Ventricle	heart
18	chr1:114107600-114109000	Enhancers	Dnd41	blood
19	chr1:114107800-114110400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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