Variant report

Variant	rs7547536
Chromosome Location	chr1:114143172-114143173
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11577235	0.89[AFR][1000 genomes]
rs35955172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61742852	1.00[AMR][1000 genomes]
rs6537791	1.00[AMR][1000 genomes]
rs6537796	1.00[AMR][1000 genomes]
rs6663791	0.83[AFR][1000 genomes]
rs6671518	0.82[AFR][1000 genomes]
rs6673379	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6693766	1.00[AMR][1000 genomes]
rs6694929	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6700802	1.00[AMR][1000 genomes]
rs7512645	1.00[AMR][1000 genomes]
rs7519133	1.00[AMR][1000 genomes]
rs7527562	1.00[AMR][1000 genomes]
rs7545980	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7553181	0.89[AFR][1000 genomes]
rs7554422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7555259	0.89[AFR][1000 genomes]
rs7556589	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012324	chr1:114135133-114206843	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114100600-114173400	Weak transcription	Gastric	stomach
2	chr1:114119200-114145200	Weak transcription	Lung	lung
3	chr1:114119200-114172400	Weak transcription	Pancreas	Pancrea
4	chr1:114119200-114173000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:114124400-114172400	Weak transcription	Aorta	Aorta
6	chr1:114126600-114157200	Weak transcription	HUVEC	blood vessel
7	chr1:114132600-114143200	Weak transcription	NH-A	brain
8	chr1:114134600-114166400	Weak transcription	Hela-S3	cervix
9	chr1:114136800-114158800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr1:114137000-114144000	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:114137000-114145200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr1:114139800-114157400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:114139800-114160000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:114140000-114157400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:114140400-114157800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr1:114140600-114145400	Weak transcription	A549	lung
17	chr1:114140600-114150600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:114140600-114151000	Weak transcription	Ovary	ovary
19	chr1:114140600-114157000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr1:114140600-114162200	Weak transcription	NHDF-Ad	bronchial
21	chr1:114140600-114172800	Weak transcription	Colonic Mucosa	Colon
22	chr1:114140800-114145200	Weak transcription	Fetal Stomach	stomach
23	chr1:114140800-114162600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr1:114141000-114145200	Weak transcription	Fetal Intestine Small	intestine
25	chr1:114141000-114157800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:114141000-114162600	Weak transcription	Fetal Intestine Large	intestine
27	chr1:114141200-114145000	Weak transcription	Fetal Brain Female	brain
28	chr1:114141200-114156800	Weak transcription	Fetal Heart	heart
29	chr1:114141200-114162200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr1:114141400-114157000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:114141400-114162400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:114141600-114150600	Weak transcription	Liver	Liver
33	chr1:114141800-114145000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links