Variant report

Variant	rs7555259
Chromosome Location	chr1:114111318-114111319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:114110456..114112451-chr1:114117714..114119729,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238256	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11102629	0.87[CEU][hapmap]
rs11102646	0.87[CEU][hapmap]
rs11577235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11578447	0.87[CEU][hapmap]
rs11579386	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes]
rs12117465	0.87[CEU][hapmap]
rs12130729	0.87[CEU][hapmap]
rs12131115	0.87[CEU][hapmap]
rs12144505	0.87[CEU][hapmap]
rs12145834	0.85[CEU][hapmap]
rs17031640	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes]
rs17031645	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes]
rs17031648	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap]
rs17448063	1.00[CEU][hapmap]
rs17461007	0.87[CEU][hapmap]
rs17461231	0.87[CEU][hapmap]
rs17507884	0.87[CEU][hapmap]
rs2359410	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35955172	0.89[AFR][1000 genomes]
rs56092022	0.86[EUR][1000 genomes]
rs6537788	0.87[CEU][hapmap]
rs6663791	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6671518	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6673379	0.86[AFR][1000 genomes]
rs6694929	1.00[ASW][hapmap];0.97[MKK][hapmap];0.89[YRI][hapmap]
rs6696459	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7514186	1.00[CEU][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7528311	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7533429	0.87[CEU][hapmap]
rs7545980	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes]
rs7547536	0.89[AFR][1000 genomes]
rs7553181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7554422	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437013	chr1:114065955-114129092	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv947128	chr1:114088844-114122533	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114094800-114138400	Weak transcription	NHDF-Ad	bronchial
2	chr1:114100200-114127600	Weak transcription	Ovary	ovary
3	chr1:114100600-114112600	Weak transcription	Esophagus	oesophagus
4	chr1:114100600-114118200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:114100600-114118600	Weak transcription	Lung	lung
6	chr1:114100600-114118800	Weak transcription	Pancreas	Pancrea
7	chr1:114100600-114140200	Weak transcription	Left Ventricle	heart
8	chr1:114100600-114173400	Weak transcription	Gastric	stomach
9	chr1:114101000-114112600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:114110800-114139600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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