Variant report

Variant	rs17464401
Chromosome Location	chr1:90661566-90661567
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12735216	0.82[ASN][1000 genomes]
rs12736146	0.82[ASN][1000 genomes]
rs17510892	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34144413	0.94[ASN][1000 genomes]
rs35260244	0.88[ASN][1000 genomes]
rs35804503	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36081001	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4342835	0.97[ASN][1000 genomes]
rs4436373	0.97[ASN][1000 genomes]
rs4571948	0.97[ASN][1000 genomes]
rs4604679	0.97[ASN][1000 genomes]
rs4626871	0.97[ASN][1000 genomes]
rs4658152	0.82[ASN][1000 genomes]
rs4658366	0.94[ASN][1000 genomes]
rs71666251	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830570	chr1:90525215-90685526	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1011555	chr1:90529122-90663382	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv535028	chr1:90529122-90663382	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90658600-90664000	Weak transcription	Brain Germinal Matrix	brain
2	chr1:90658600-90664200	Weak transcription	Fetal Brain Female	brain
3	chr1:90658800-90664000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:90658800-90664200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:90659000-90662600	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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