Variant report

Variant	rs71666251
Chromosome Location	chr1:90743354-90743355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12407088	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12735216	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12736146	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12743329	0.88[ASN][1000 genomes]
rs17464401	0.88[ASN][1000 genomes]
rs17510892	0.88[ASN][1000 genomes]
rs34144413	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4342835	0.85[ASN][1000 genomes]
rs4436373	0.85[ASN][1000 genomes]
rs4571948	0.85[ASN][1000 genomes]
rs4604679	0.85[ASN][1000 genomes]
rs4626871	0.85[ASN][1000 genomes]
rs4658152	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4658366	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546803	chr1:90679734-90777717	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv524317	chr1:90729744-90836739	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90736200-90752000	Weak transcription	Aorta	Aorta
2	chr1:90741200-90746600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:90742000-90747200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:90742600-90743400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links