Variant report

Variant	rs34144413
Chromosome Location	chr1:90700015-90700016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12407088	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12735216	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12736146	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17464401	0.94[ASN][1000 genomes]
rs17510892	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35260244	0.83[ASN][1000 genomes]
rs35804503	0.82[ASN][1000 genomes]
rs36081001	0.82[ASN][1000 genomes]
rs4342835	0.91[ASN][1000 genomes]
rs4436373	0.91[ASN][1000 genomes]
rs4571948	0.91[ASN][1000 genomes]
rs4604679	0.91[ASN][1000 genomes]
rs4626871	0.91[ASN][1000 genomes]
rs4658152	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4658366	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71666251	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546803	chr1:90679734-90777717	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3339416	chr1:90696164-90701362	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90692000-90706200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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