Variant report

Variant	rs17478975
Chromosome Location	chr6:134150286-134150287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1208229	0.92[AMR][1000 genomes]
rs1208231	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1208232	0.88[AMR][1000 genomes]
rs1208270	0.88[AMR][1000 genomes]
rs1208275	0.88[AMR][1000 genomes]
rs1208276	1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[AMR][1000 genomes]
rs1208277	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[AMR][1000 genomes]
rs1763935	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134138200-134151200	Weak transcription	Fetal Lung	lung
2	chr6:134148400-134151600	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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