Variant report

Variant	rs1208270
Chromosome Location	chr6:134174693-134174694
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCF21-1	chr6:134172335-134175130	XLOC_005467

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1126391	0.99[EUR][1000 genomes]
rs1208229	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208231	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208261	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1208271	0.99[EUR][1000 genomes]
rs1208275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1208276	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208277	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1572425	0.89[CEU][hapmap]
rs17478975	0.88[AMR][1000 genomes]
rs1763935	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1967916	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2327431	0.89[CEU][hapmap]
rs2327433	0.89[CEU][hapmap]
rs4896011	0.89[CEU][hapmap]
rs6569911	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6569916	0.89[CEU][hapmap]
rs6900327	1.00[EUR][1000 genomes]
rs7747410	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766238	0.89[CEU][hapmap]
rs9389113	0.88[CEU][hapmap]
rs9389114	0.89[CEU][hapmap]
rs9402547	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134174200-134175200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
2	chr6:134174600-134175000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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