Variant report

Variant	rs1208271
Chromosome Location	chr6:134176315-134176316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1126391	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208229	0.99[EUR][1000 genomes]
rs1208231	0.99[EUR][1000 genomes]
rs1208232	0.99[EUR][1000 genomes]
rs1208261	1.00[EUR][1000 genomes]
rs1208270	0.99[EUR][1000 genomes]
rs1208275	1.00[EUR][1000 genomes]
rs1208276	0.89[CEU][hapmap];0.99[EUR][1000 genomes]
rs1208277	0.89[CEU][hapmap];0.99[EUR][1000 genomes]
rs1572425	1.00[CEU][hapmap]
rs1763935	0.99[EUR][1000 genomes]
rs1967916	0.99[EUR][1000 genomes]
rs2327431	1.00[CEU][hapmap]
rs2327433	1.00[CEU][hapmap]
rs4896011	1.00[CEU][hapmap]
rs6569911	0.99[EUR][1000 genomes]
rs6569916	0.89[CEU][hapmap]
rs6900327	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7747410	0.99[EUR][1000 genomes]
rs7766238	1.00[CEU][hapmap]
rs9389114	1.00[CEU][hapmap]
rs9402547	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134175000-134176600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr6:134175200-134176400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:134175200-134176600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr6:134175200-134176600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr6:134175200-134176600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:134175200-134176800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:134175200-134176800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr6:134175200-134177600	Active TSS	Right Atrium	heart
9	chr6:134175400-134176400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:134175400-134176600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:134175400-134176600	Bivalent Enhancer	Fetal Brain Male	brain
12	chr6:134175400-134176600	Bivalent/Poised TSS	Right Ventricle	heart
13	chr6:134175400-134176800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr6:134175400-134177000	Bivalent/Poised TSS	Fetal Kidney	kidney
15	chr6:134175400-134177200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
16	chr6:134175600-134176400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:134175600-134176400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
18	chr6:134175600-134176400	Bivalent/Poised TSS	Left Ventricle	heart
19	chr6:134175800-134176400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:134175800-134176400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
21	chr6:134175800-134176400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:134175800-134176400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:134175800-134176400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:134175800-134176400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:134175800-134176400	Bivalent Enhancer	Brain Germinal Matrix	brain
26	chr6:134175800-134176400	Bivalent Enhancer	Esophagus	oesophagus
27	chr6:134175800-134176400	Bivalent/Poised TSS	Fetal Lung	lung
28	chr6:134175800-134176400	Bivalent Enhancer	Fetal Muscle Leg	muscle
29	chr6:134175800-134176400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
30	chr6:134175800-134176400	Bivalent Enhancer	Lung	lung
31	chr6:134175800-134176400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
32	chr6:134175800-134176600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
33	chr6:134175800-134176600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
34	chr6:134175800-134176600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
35	chr6:134175800-134176600	Bivalent Enhancer	Placenta	Placenta
36	chr6:134176000-134176400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
37	chr6:134176000-134176400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
38	chr6:134176000-134176400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
39	chr6:134176000-134176400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
40	chr6:134176000-134176600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:134176200-134176400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr6:134176200-134176400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:134176200-134176400	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:134176200-134176400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:134176200-134176400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
46	chr6:134176200-134176400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:134176200-134176400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:134176200-134176400	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:134176200-134176400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
50	chr6:134176200-134176400	Bivalent Enhancer	Adipose Nuclei	Adipose

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