Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134197571..134199761-chr6:134216243..134218641,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1126391	0.99[EUR][1000 genomes]
rs1208229	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208231	1.00[EUR][1000 genomes]
rs1208232	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208261	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1208270	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208271	0.99[EUR][1000 genomes]
rs1208275	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1208276	0.88[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208277	0.88[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1414669	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1572425	1.00[CEU][hapmap]
rs1763935	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327431	1.00[CEU][hapmap]
rs2327433	1.00[CEU][hapmap]
rs4896011	1.00[CEU][hapmap]
rs6569911	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569916	0.88[CEU][hapmap]
rs6900327	1.00[EUR][1000 genomes]
rs6932322	1.00[AFR][1000 genomes]
rs7747410	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766238	1.00[CEU][hapmap]
rs9389114	1.00[CEU][hapmap]
rs9402547	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134186600-134198000	Weak transcription	Fetal Lung	lung
2	chr6:134196000-134197800	Weak transcription	Ovary	ovary

Quick Search: