Variant report
| Variant | rs1208261 |
|---|---|
| Chromosome Location | chr6:134192843-134192844 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:134189717..134191560-chr6:134192198..134195026,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1126391 | 1.00[EUR][1000 genomes] |
| rs1208229 | 0.81[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1208231 | 1.00[AFR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1208232 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1208270 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1208271 | 1.00[EUR][1000 genomes] |
| rs1208275 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1208276 | 0.89[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1208277 | 0.89[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1414669 | 0.80[AMR][1000 genomes] |
| rs1572425 | 1.00[CEU][hapmap] |
| rs1763935 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1967916 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2327431 | 1.00[CEU][hapmap] |
| rs2327433 | 1.00[CEU][hapmap] |
| rs3777896 | 1.00[CHB][hapmap] |
| rs3777899 | 1.00[CHB][hapmap] |
| rs4896011 | 1.00[CEU][hapmap] |
| rs6569911 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6569916 | 0.89[CEU][hapmap] |
| rs6900327 | 0.99[EUR][1000 genomes] |
| rs6902440 | 1.00[CHB][hapmap] |
| rs7747410 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7766238 | 1.00[CEU][hapmap] |
| rs9389114 | 1.00[CEU][hapmap] |
| rs9402547 | 0.89[CEU][hapmap] |
| rs9483631 | 1.00[CHB][hapmap] |
| rs9483634 | 1.00[CHB][hapmap] |
| rs9493768 | 1.00[CHB][hapmap] |
| rs9493771 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34122 | chr6:134089019-134378252 | Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:134186600-134198000 | Weak transcription | Fetal Lung | lung |
| 2 | chr6:134192400-134193000 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
