Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCF21-1	chr6:134172335-134175130	XLOC_005467

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1126391	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1208229	1.00[EUR][1000 genomes]
rs1208231	1.00[EUR][1000 genomes]
rs1208232	1.00[EUR][1000 genomes]
rs1208261	0.99[EUR][1000 genomes]
rs1208270	1.00[EUR][1000 genomes]
rs1208271	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1208275	0.99[EUR][1000 genomes]
rs1208276	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1208277	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1572425	0.89[CEU][hapmap]
rs17062925	1.00[CHB][hapmap]
rs1763935	1.00[EUR][1000 genomes]
rs1967916	1.00[EUR][1000 genomes]
rs2327431	0.89[CEU][hapmap]
rs2327433	0.89[CEU][hapmap]
rs4896011	0.89[CEU][hapmap]
rs6569911	1.00[EUR][1000 genomes]
rs6569916	0.80[CEU][hapmap]
rs6925803	1.00[CHB][hapmap]
rs7747410	1.00[EUR][1000 genomes]
rs7766238	0.89[CEU][hapmap]
rs9389114	0.89[CEU][hapmap]
rs9402547	0.80[CEU][hapmap]
rs9493754	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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