Variant report

Variant	rs1208231
Chromosome Location	chr6:134187014-134187015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1126391	0.99[EUR][1000 genomes]
rs1208229	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208232	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208261	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1208270	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208271	0.99[EUR][1000 genomes]
rs1208275	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1208276	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208277	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17478975	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1763935	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1967916	1.00[EUR][1000 genomes]
rs6569911	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6900327	1.00[EUR][1000 genomes]
rs7747410	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134186000-134187200	ZNF genes & repeats	Fetal Stomach	stomach
2	chr6:134186600-134198000	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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