Variant report

Variant	rs17487324
Chromosome Location	chr3:88558442-88558443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs62269512	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62269513	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62269514	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62269516	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62269530	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62271215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62271216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62271217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6803194	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73142462	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv877154	chr3:88437886-88583829	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88558000-88558600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr3:88558000-88558600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr3:88558200-88559000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr3:88558400-88559200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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