Variant report

Variant	rs6803194
Chromosome Location	chr3:88626350-88626351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11128053	0.88[AFR][1000 genomes]
rs12487385	0.87[AFR][1000 genomes]
rs12488286	0.89[AFR][1000 genomes]
rs12491766	0.89[AFR][1000 genomes]
rs12495478	0.87[AFR][1000 genomes]
rs12629360	0.88[AFR][1000 genomes]
rs17487324	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56076980	0.84[AFR][1000 genomes]
rs62269512	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62269513	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62269514	0.96[EUR][1000 genomes]
rs62269516	0.90[EUR][1000 genomes]
rs62269530	0.93[EUR][1000 genomes]
rs62271215	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62271216	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62271217	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6551350	0.88[AFR][1000 genomes]
rs6778723	0.87[AFR][1000 genomes]
rs6794212	0.88[AFR][1000 genomes]
rs6799848	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv3906	chr3:88609226-88654550	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1014703	chr3:88623532-88733631	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3394276	chr3:88626087-88628635	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
5	esv3431022	chr3:88626337-88628535	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88622400-88627800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:88623800-88627800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links