Variant report

Variant	rs62269530
Chromosome Location	chr3:88665419-88665420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17487324	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62269512	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62269513	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62269514	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62269516	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62269535	0.83[EUR][1000 genomes]
rs62269536	0.83[EUR][1000 genomes]
rs62269540	0.82[EUR][1000 genomes]
rs62269541	0.82[EUR][1000 genomes]
rs62271215	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62271216	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62271217	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6803194	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1014703	chr3:88623532-88733631	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv19521	chr3:88664755-88665910	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88664600-88667800	Enhancers	Fetal Brain Female	brain
2	chr3:88665000-88666000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:88665000-88666600	Enhancers	Fetal Brain Male	brain
4	chr3:88665400-88667600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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