Variant report

Variant	rs56076980
Chromosome Location	chr3:88598075-88598076
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C3orf38-2	chr3:88596928-88599994	l_2409_chr3:88470262-88514628_testes

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10511138	0.87[ASN][1000 genomes]
rs11128053	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12486895	1.00[ASN][1000 genomes]
rs12487385	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487560	0.88[ASN][1000 genomes]
rs12487623	0.88[ASN][1000 genomes]
rs12488032	1.00[ASN][1000 genomes]
rs12488286	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12488396	0.99[ASN][1000 genomes]
rs12489078	0.82[ASN][1000 genomes]
rs12490357	0.88[ASN][1000 genomes]
rs12491633	0.85[ASN][1000 genomes]
rs12491766	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12494001	0.86[ASN][1000 genomes]
rs12495478	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12495558	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12629360	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12637931	0.88[ASN][1000 genomes]
rs12639499	0.87[ASN][1000 genomes]
rs13073581	0.87[ASN][1000 genomes]
rs13321865	0.80[ASN][1000 genomes]
rs17559821	0.87[ASN][1000 genomes]
rs17560386	0.88[ASN][1000 genomes]
rs1979751	0.87[ASN][1000 genomes]
rs2132362	0.82[ASN][1000 genomes]
rs28447483	0.88[ASN][1000 genomes]
rs28784899	0.87[ASN][1000 genomes]
rs28876760	0.90[ASN][1000 genomes]
rs55694746	1.00[ASN][1000 genomes]
rs56076642	0.88[ASN][1000 genomes]
rs56359806	0.87[ASN][1000 genomes]
rs59752267	0.99[ASN][1000 genomes]
rs59757044	0.87[ASN][1000 genomes]
rs60418303	0.99[ASN][1000 genomes]
rs60574566	0.99[ASN][1000 genomes]
rs61176217	0.99[ASN][1000 genomes]
rs6551350	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67260046	0.84[ASN][1000 genomes]
rs6776183	0.85[ASN][1000 genomes]
rs6778723	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794212	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6799848	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6802531	0.81[ASN][1000 genomes]
rs6803194	0.84[AFR][1000 genomes]
rs73134314	0.87[ASN][1000 genomes]
rs73134400	0.85[ASN][1000 genomes]
rs73136414	0.82[ASN][1000 genomes]
rs73136419	0.82[ASN][1000 genomes]
rs73146499	1.00[ASN][1000 genomes]
rs73152336	0.88[ASN][1000 genomes]
rs7430981	0.87[ASN][1000 genomes]
rs7431370	0.82[ASN][1000 genomes]
rs7432988	0.99[ASN][1000 genomes]
rs7433029	0.99[ASN][1000 genomes]
rs7637716	0.85[ASN][1000 genomes]
rs7652836	0.88[ASN][1000 genomes]
rs9824652	0.81[ASN][1000 genomes]
rs9856843	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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