Variant report

Variant	rs28876760
Chromosome Location	chr5:74430012-74430013
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11128053	0.89[ASN][1000 genomes]
rs12486895	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12487385	0.90[ASN][1000 genomes]
rs12488032	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12488286	0.89[ASN][1000 genomes]
rs12488396	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12491766	0.89[ASN][1000 genomes]
rs12495478	0.86[ASN][1000 genomes]
rs12495558	0.90[ASN][1000 genomes]
rs12629360	0.89[ASN][1000 genomes]
rs55694746	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56076980	0.90[ASN][1000 genomes]
rs59752267	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60418303	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60574566	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61176217	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6551350	0.89[ASN][1000 genomes]
rs6778723	0.90[ASN][1000 genomes]
rs6794212	0.89[ASN][1000 genomes]
rs6799848	0.89[ASN][1000 genomes]
rs73146499	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7432988	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7433029	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74427600-74434600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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