Variant report

Variant	rs6794212
Chromosome Location	chr3:88625045-88625046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10511138	0.88[ASN][1000 genomes]
rs11128053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12486895	0.99[ASN][1000 genomes]
rs12487385	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12487560	0.89[ASN][1000 genomes]
rs12487623	0.89[ASN][1000 genomes]
rs12488032	0.99[ASN][1000 genomes]
rs12488286	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12488396	1.00[ASN][1000 genomes]
rs12489078	0.84[ASN][1000 genomes]
rs12490357	0.89[ASN][1000 genomes]
rs12491633	0.86[ASN][1000 genomes]
rs12491766	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494001	0.87[ASN][1000 genomes]
rs12495478	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12495558	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12629360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637931	0.89[ASN][1000 genomes]
rs12639499	0.85[ASN][1000 genomes]
rs13073581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13321865	0.81[ASN][1000 genomes]
rs17559821	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17560386	0.89[ASN][1000 genomes]
rs1979751	0.88[ASN][1000 genomes]
rs2132362	0.84[ASN][1000 genomes]
rs28447483	0.89[ASN][1000 genomes]
rs28784899	0.88[ASN][1000 genomes]
rs28876760	0.89[ASN][1000 genomes]
rs55694746	0.99[ASN][1000 genomes]
rs56076642	0.89[ASN][1000 genomes]
rs56076980	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56359806	0.88[ASN][1000 genomes]
rs59752267	1.00[ASN][1000 genomes]
rs59757044	0.85[ASN][1000 genomes]
rs60418303	1.00[ASN][1000 genomes]
rs60574566	1.00[ASN][1000 genomes]
rs61176217	1.00[ASN][1000 genomes]
rs6551350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67260046	0.85[ASN][1000 genomes]
rs6776183	0.86[ASN][1000 genomes]
rs6778723	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6799848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802531	0.82[ASN][1000 genomes]
rs6803194	0.88[AFR][1000 genomes]
rs73134314	0.88[ASN][1000 genomes]
rs73134400	0.86[ASN][1000 genomes]
rs73136414	0.84[ASN][1000 genomes]
rs73136419	0.84[ASN][1000 genomes]
rs73146499	0.99[ASN][1000 genomes]
rs73152336	0.89[ASN][1000 genomes]
rs7430981	0.88[ASN][1000 genomes]
rs7431370	0.83[ASN][1000 genomes]
rs7432988	1.00[ASN][1000 genomes]
rs7433029	1.00[ASN][1000 genomes]
rs7637716	0.86[ASN][1000 genomes]
rs7652836	0.89[ASN][1000 genomes]
rs9824652	0.82[ASN][1000 genomes]
rs9856843	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv3906	chr3:88609226-88654550	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1014703	chr3:88623532-88733631	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88622400-88627800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:88623800-88627800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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