Variant report

Variant	rs17493001
Chromosome Location	chr18:25521507-25521508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17492966	1.00[AMR][1000 genomes]
rs17492987	1.00[AMR][1000 genomes]
rs17493021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17493332	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17493437	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17493590	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17494353	1.00[AMR][1000 genomes]
rs17521881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17522271	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17522485	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17522749	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17535538	1.00[AMR][1000 genomes]
rs56852252	1.00[AMR][1000 genomes]
rs73945007	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv2760473	chr18:25386088-25571466	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1066192	chr18:25454413-25606736	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv543669	chr18:25454413-25606736	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25512200-25540000	Weak transcription	Aorta	Aorta
2	chr18:25516400-25530400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr18:25518200-25523200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr18:25519600-25522400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:25519600-25522400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr18:25520000-25522200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr18:25520000-25522200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr18:25521400-25535800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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