Variant report

Variant	rs17494353
Chromosome Location	chr18:25654156-25654157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17492966	1.00[AMR][1000 genomes]
rs17492987	1.00[AMR][1000 genomes]
rs17493001	1.00[AMR][1000 genomes]
rs17493021	1.00[AMR][1000 genomes]
rs17493332	1.00[AMR][1000 genomes]
rs17493437	1.00[AMR][1000 genomes]
rs17493590	1.00[AMR][1000 genomes]
rs17521881	1.00[AMR][1000 genomes]
rs17522271	1.00[AMR][1000 genomes]
rs17522485	1.00[AMR][1000 genomes]
rs17522749	1.00[AMR][1000 genomes]
rs17535538	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17535615	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25643000-25655200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:25644000-25655200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr18:25645000-25658200	Weak transcription	Fetal Brain Female	brain
4	chr18:25646200-25666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr18:25647000-25655200	Weak transcription	NH-A	brain
6	chr18:25647600-25655000	Weak transcription	Osteobl	bone
7	chr18:25649600-25661400	Enhancers	Fetal Heart	heart
8	chr18:25650400-25654200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr18:25650600-25666800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr18:25651200-25654200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr18:25651200-25661800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr18:25651400-25655200	Weak transcription	Brain Angular Gyrus	brain
13	chr18:25651400-25655200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr18:25651400-25655400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr18:25651600-25655200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr18:25651600-25665200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr18:25651800-25655800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr18:25652200-25655000	Weak transcription	Brain Anterior Caudate	brain
19	chr18:25652200-25655200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr18:25652400-25655000	Weak transcription	Brain Hippocampus Middle	brain
21	chr18:25652400-25655200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr18:25652400-25655200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr18:25652400-25655400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr18:25652400-25657000	Weak transcription	HUVEC	blood vessel
25	chr18:25652400-25659600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr18:25652400-25659600	Weak transcription	Right Atrium	heart
27	chr18:25652600-25659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr18:25652600-25661800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr18:25652600-25663800	Weak transcription	Right Ventricle	heart
30	chr18:25653000-25654400	Enhancers	Liver	Liver
31	chr18:25653200-25654600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr18:25653200-25657200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr18:25653400-25654400	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr18:25653400-25654400	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr18:25653400-25656200	Enhancers	HepG2	liver
36	chr18:25653600-25654200	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr18:25653600-25654200	Enhancers	HSMMtube	muscle
38	chr18:25653600-25654600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr18:25653600-25655200	Enhancers	A549	lung
40	chr18:25653600-25655600	Enhancers	Left Ventricle	heart
41	chr18:25653800-25654200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr18:25653800-25654400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr18:25653800-25654400	Enhancers	Brain Substantia Nigra	brain
44	chr18:25653800-25655200	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr18:25654000-25654200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr18:25654000-25654200	Enhancers	Muscle Satellite Cultured Cells	--
47	chr18:25654000-25655200	Weak transcription	Brain Germinal Matrix	brain
48	chr18:25654000-25655200	Enhancers	HSMM	muscle
49	chr18:25654000-25656800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr18:25654000-25666000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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