Variant report

Variant	rs17522749
Chromosome Location	chr18:25613118-25613119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17492966	1.00[AMR][1000 genomes]
rs17492987	1.00[AMR][1000 genomes]
rs17493001	1.00[AMR][1000 genomes]
rs17493021	1.00[AMR][1000 genomes]
rs17493332	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17493437	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17493590	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17494353	1.00[AMR][1000 genomes]
rs17521881	1.00[AMR][1000 genomes]
rs17522271	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17522485	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17535538	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25583800-25621400	Weak transcription	Right Ventricle	heart
2	chr18:25595200-25615000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr18:25600000-25619000	Weak transcription	HSMM	muscle
4	chr18:25609800-25621600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr18:25610600-25615000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr18:25611400-25615800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr18:25612000-25613400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr18:25612000-25614800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr18:25612000-25615800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr18:25612400-25614800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr18:25612400-25619000	Weak transcription	Brain Germinal Matrix	brain
12	chr18:25612600-25613200	Weak transcription	Fetal Heart	heart
13	chr18:25612600-25616600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr18:25612800-25614600	Weak transcription	NH-A	brain
15	chr18:25612800-25616400	Weak transcription	Osteobl	bone
16	chr18:25612800-25618200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr18:25612800-25618200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr18:25612800-25619000	Weak transcription	A549	lung
19	chr18:25613000-25614800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr18:25613000-25616400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr18:25613000-25617800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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