Variant report

Variant	rs1749798
Chromosome Location	chr10:44428806-44428807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1147902	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1254744	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1254855	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1254857	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1254858	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1254859	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1303233	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1325487	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1570847	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1749799	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2147875	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2147876	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2169198	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2798993	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs898548	0.85[AMR][1000 genomes]
rs898550	0.86[JPT][hapmap]
rs912803	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs984000	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44422800-44437600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44427200-44429200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:44427200-44434400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:44427600-44429200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:44427800-44429200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:44427800-44429200	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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