Variant report

Variant	rs1570847
Chromosome Location	chr10:44402377-44402378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10508874	1.00[ASN][1000 genomes]
rs10751347	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751348	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899948	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147900	0.90[ASN][1000 genomes]
rs1147902	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1254744	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1254855	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1254857	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1254858	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1254859	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1303233	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1325487	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1749798	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1749799	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1813245	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1813897	0.94[ASN][1000 genomes]
rs2147875	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2147876	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2169198	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274241	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2798993	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4948787	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948789	0.97[ASN][1000 genomes]
rs7090750	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7899385	0.99[ASN][1000 genomes]
rs7900414	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915088	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs882902	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883400	0.99[ASN][1000 genomes]
rs898548	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs912803	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9732790	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs984000	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44395000-44406200	Weak transcription	Esophagus	oesophagus
2	chr10:44398800-44402600	Enhancers	Fetal Muscle Leg	muscle
3	chr10:44399200-44403400	Enhancers	Ovary	ovary
4	chr10:44399400-44402400	Enhancers	Fetal Muscle Trunk	muscle
5	chr10:44399400-44402600	Enhancers	Fetal Stomach	stomach
6	chr10:44399800-44402400	Enhancers	Right Atrium	heart
7	chr10:44399800-44402600	Enhancers	Adipose Nuclei	Adipose
8	chr10:44400000-44402400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:44400000-44402400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr10:44400000-44402400	Enhancers	Left Ventricle	heart
11	chr10:44400000-44402400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr10:44400200-44402400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:44400200-44402400	Enhancers	HSMMtube	muscle
14	chr10:44400200-44402600	Enhancers	Fetal Kidney	kidney
15	chr10:44400400-44402400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr10:44400400-44402400	Enhancers	Stomach Smooth Muscle	stomach
17	chr10:44400400-44406400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:44400800-44402400	Enhancers	Osteobl	bone
19	chr10:44401200-44402400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr10:44401200-44409200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:44401600-44402400	Enhancers	Fetal Intestine Small	intestine
22	chr10:44401600-44402600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:44401600-44405600	Weak transcription	NHLF	lung
24	chr10:44401800-44402400	Enhancers	Psoas Muscle	Psoas
25	chr10:44401800-44402400	Enhancers	Right Ventricle	heart
26	chr10:44402000-44402400	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr10:44402000-44402400	Enhancers	Fetal Lung	lung
28	chr10:44402000-44402400	Enhancers	Lung	lung
29	chr10:44402000-44402400	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr10:44402000-44402400	Active TSS	Small Intestine	intestine
31	chr10:44402000-44405600	Weak transcription	Spleen	Spleen
32	chr10:44402200-44402400	Enhancers	Placenta	Placenta
33	chr10:44402200-44405000	Weak transcription	Fetal Heart	heart
34	chr10:44402200-44405000	Weak transcription	NHDF-Ad	bronchial
35	chr10:44402200-44405400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr10:44402200-44405600	Weak transcription	Colon Smooth Muscle	Colon

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