Variant report

Variant	rs2274241
Chromosome Location	chr10:44407897-44407898
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF32-3	chr10:44407741-44407926	XLOC_008792
2	lnc-C10orf136-1	chr10:44407797-44407926	XLOC_008473
3	lnc-C10orf136-1	chr10:44407892-44407926	XLOC_008473
4	lnc-C10orf136-1	chr10:44407894-44407926	XLOC_008473

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10508874	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751347	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751348	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793506	0.87[EUR][1000 genomes]
rs10899948	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1147900	0.90[ASN][1000 genomes]
rs1147902	0.91[ASN][1000 genomes]
rs1254744	0.91[ASN][1000 genomes]
rs1254855	0.91[ASN][1000 genomes]
rs1254857	0.91[ASN][1000 genomes]
rs1254858	0.91[ASN][1000 genomes]
rs1254859	0.91[ASN][1000 genomes]
rs1303233	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1325487	0.91[ASN][1000 genomes]
rs1570847	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1749799	0.90[ASN][1000 genomes]
rs1813245	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1813897	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2147875	0.92[ASN][1000 genomes]
rs2147876	0.92[ASN][1000 genomes]
rs2169198	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2798993	0.89[ASN][1000 genomes]
rs4948787	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948789	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7090750	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7899385	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7900414	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7915088	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs882902	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs883400	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs898548	0.99[ASN][1000 genomes]
rs912803	0.91[ASN][1000 genomes]
rs9732790	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs984000	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44401200-44409200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:44405600-44408200	Enhancers	Right Ventricle	heart
3	chr10:44406000-44408800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:44406400-44409200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:44406400-44409400	Weak transcription	Left Ventricle	heart
6	chr10:44406400-44417800	Weak transcription	Right Atrium	heart
7	chr10:44406800-44421800	Weak transcription	Fetal Heart	heart
8	chr10:44407600-44408600	Enhancers	Spleen	Spleen
9	chr10:44407600-44409800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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