Variant report

Variant	rs883400
Chromosome Location	chr10:44395825-44395826
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44387546..44389292-chr10:44394424..44396340,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10508874	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751347	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751348	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793506	0.81[EUR][1000 genomes]
rs10899948	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1147900	0.91[ASN][1000 genomes]
rs1147902	0.91[ASN][1000 genomes]
rs1254744	0.91[ASN][1000 genomes]
rs1254855	0.91[ASN][1000 genomes]
rs1254857	0.91[ASN][1000 genomes]
rs1254858	0.91[ASN][1000 genomes]
rs1254859	0.91[ASN][1000 genomes]
rs1303233	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1325487	0.91[ASN][1000 genomes]
rs1468060	0.80[ASN][1000 genomes]
rs1570847	0.99[ASN][1000 genomes]
rs1749799	0.89[ASN][1000 genomes]
rs1813245	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1813897	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2147875	0.91[ASN][1000 genomes]
rs2147876	0.91[ASN][1000 genomes]
rs2169198	0.99[ASN][1000 genomes]
rs2274241	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2798993	0.88[ASN][1000 genomes]
rs4948787	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948789	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7090750	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7899385	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900414	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7915088	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs882902	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs898548	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912803	0.91[ASN][1000 genomes]
rs9732790	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs984000	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44388800-44397600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:44392400-44402000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44393800-44396000	Enhancers	Right Atrium	heart
4	chr10:44393800-44396400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:44394000-44396000	Enhancers	Spleen	Spleen
6	chr10:44394000-44397800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:44394200-44397600	Enhancers	Fetal Muscle Leg	muscle
8	chr10:44395000-44396000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:44395000-44396000	Enhancers	Fetal Muscle Trunk	muscle
10	chr10:44395000-44406200	Weak transcription	Esophagus	oesophagus
11	chr10:44395200-44396200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:44395200-44397600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:44395200-44399000	Weak transcription	Right Ventricle	heart
14	chr10:44395200-44400000	Weak transcription	Fetal Heart	heart
15	chr10:44395200-44400000	Weak transcription	Left Ventricle	heart
16	chr10:44395200-44400200	Weak transcription	Fetal Kidney	kidney
17	chr10:44395400-44396400	Weak transcription	Osteobl	bone
18	chr10:44395400-44400400	Weak transcription	NHDF-Ad	bronchial
19	chr10:44395600-44397000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr10:44395800-44396000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:44395800-44399800	Weak transcription	Adipose Nuclei	Adipose
22	chr10:44395800-44401400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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