Variant report

Variant	rs10899948
Chromosome Location	chr10:44401195-44401196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10508874	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751347	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751348	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793506	0.86[EUR][1000 genomes]
rs1147900	0.90[ASN][1000 genomes]
rs1147902	0.90[ASN][1000 genomes]
rs1254744	0.90[ASN][1000 genomes]
rs1254855	0.90[ASN][1000 genomes]
rs1254857	0.90[ASN][1000 genomes]
rs1254858	0.90[ASN][1000 genomes]
rs1254859	0.90[ASN][1000 genomes]
rs1303233	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1325487	0.90[ASN][1000 genomes]
rs1570847	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1749799	0.89[ASN][1000 genomes]
rs1813245	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1813897	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2147875	0.91[ASN][1000 genomes]
rs2147876	0.91[ASN][1000 genomes]
rs2169198	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274241	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2798993	0.87[ASN][1000 genomes]
rs4948787	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948789	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7090750	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7899385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7900414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915088	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs882902	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883400	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs898548	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs912803	0.90[ASN][1000 genomes]
rs9732790	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs984000	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44392400-44402000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44395000-44406200	Weak transcription	Esophagus	oesophagus
3	chr10:44395800-44401400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:44396400-44401200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:44398800-44402600	Enhancers	Fetal Muscle Leg	muscle
6	chr10:44399200-44403400	Enhancers	Ovary	ovary
7	chr10:44399400-44402400	Enhancers	Fetal Muscle Trunk	muscle
8	chr10:44399400-44402600	Enhancers	Fetal Stomach	stomach
9	chr10:44399800-44401600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:44399800-44402200	Enhancers	Rectal Smooth Muscle	rectum
11	chr10:44399800-44402400	Enhancers	Right Atrium	heart
12	chr10:44399800-44402600	Enhancers	Adipose Nuclei	Adipose
13	chr10:44400000-44402200	Enhancers	Fetal Heart	heart
14	chr10:44400000-44402400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:44400000-44402400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr10:44400000-44402400	Enhancers	Left Ventricle	heart
17	chr10:44400000-44402400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr10:44400200-44401400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:44400200-44402400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:44400200-44402400	Enhancers	HSMMtube	muscle
21	chr10:44400200-44402600	Enhancers	Fetal Kidney	kidney
22	chr10:44400400-44401200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:44400400-44401400	Weak transcription	Colon Smooth Muscle	Colon
24	chr10:44400400-44401800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:44400400-44402200	Enhancers	HSMM	muscle
26	chr10:44400400-44402200	Enhancers	NHDF-Ad	bronchial
27	chr10:44400400-44402400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr10:44400400-44402400	Enhancers	Stomach Smooth Muscle	stomach
29	chr10:44400400-44406400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr10:44400600-44401600	Enhancers	NHLF	lung
31	chr10:44400600-44401800	Weak transcription	Right Ventricle	heart
32	chr10:44400600-44402000	Weak transcription	Lung	lung
33	chr10:44400600-44402000	Enhancers	Spleen	Spleen
34	chr10:44400800-44401200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr10:44400800-44401600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:44400800-44402200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:44400800-44402400	Enhancers	Osteobl	bone
38	chr10:44401000-44401200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:44401000-44401400	Enhancers	Fetal Lung	lung
40	chr10:44401000-44402000	Enhancers	Rectal Mucosa Donor 31	rectum

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