Variant report

Variant	rs10793506
Chromosome Location	chr10:44400396-44400397
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10508874	0.84[EUR][1000 genomes]
rs10751347	0.87[EUR][1000 genomes]
rs10751348	0.87[EUR][1000 genomes]
rs10793507	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10899947	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10899948	0.86[EUR][1000 genomes]
rs1254851	0.82[ASN][1000 genomes]
rs1408939	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1813245	0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs2274241	0.87[EUR][1000 genomes]
rs2798993	0.81[JPT][hapmap]
rs4948787	0.86[EUR][1000 genomes]
rs4948789	0.83[EUR][1000 genomes]
rs7090750	0.87[EUR][1000 genomes]
rs7899385	0.82[EUR][1000 genomes]
rs7900414	0.87[EUR][1000 genomes]
rs7915088	0.87[EUR][1000 genomes]
rs882902	0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs883400	0.81[EUR][1000 genomes]
rs898550	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9732790	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44392400-44402000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44395000-44406200	Weak transcription	Esophagus	oesophagus
3	chr10:44395400-44400400	Weak transcription	NHDF-Ad	bronchial
4	chr10:44395800-44401400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:44396400-44401200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:44397200-44400400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:44397200-44400800	Weak transcription	Osteobl	bone
8	chr10:44397800-44400400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:44397800-44401000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:44398800-44402600	Enhancers	Fetal Muscle Leg	muscle
11	chr10:44399200-44403400	Enhancers	Ovary	ovary
12	chr10:44399400-44402400	Enhancers	Fetal Muscle Trunk	muscle
13	chr10:44399400-44402600	Enhancers	Fetal Stomach	stomach
14	chr10:44399600-44400600	Enhancers	Right Ventricle	heart
15	chr10:44399800-44400400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:44399800-44401600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:44399800-44402200	Enhancers	Rectal Smooth Muscle	rectum
18	chr10:44399800-44402400	Enhancers	Right Atrium	heart
19	chr10:44399800-44402600	Enhancers	Adipose Nuclei	Adipose
20	chr10:44400000-44400400	Enhancers	Brain Cingulate Gyrus	brain
21	chr10:44400000-44400800	Enhancers	Fetal Lung	lung
22	chr10:44400000-44400800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr10:44400000-44402200	Enhancers	Fetal Heart	heart
24	chr10:44400000-44402400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:44400000-44402400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr10:44400000-44402400	Enhancers	Left Ventricle	heart
27	chr10:44400000-44402400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:44400200-44400400	Enhancers	Brain Hippocampus Middle	brain
29	chr10:44400200-44400400	Enhancers	Colon Smooth Muscle	Colon
30	chr10:44400200-44400400	Enhancers	Fetal Intestine Large	intestine
31	chr10:44400200-44400600	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr10:44400200-44400600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:44400200-44400600	Weak transcription	Spleen	Spleen
34	chr10:44400200-44400800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:44400200-44401400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:44400200-44402400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:44400200-44402400	Enhancers	HSMMtube	muscle
38	chr10:44400200-44402600	Enhancers	Fetal Kidney	kidney

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