Variant report

Variant	rs1813245
Chromosome Location	chr10:44407430-44407431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10508874	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751347	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751348	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793506	0.87[EUR][1000 genomes]
rs10899948	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1147900	0.90[ASN][1000 genomes]
rs1147902	0.91[ASN][1000 genomes]
rs1254744	0.91[ASN][1000 genomes]
rs1254855	0.91[ASN][1000 genomes]
rs1254857	0.91[ASN][1000 genomes]
rs1254858	0.91[ASN][1000 genomes]
rs1254859	0.91[ASN][1000 genomes]
rs1303233	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1325487	0.91[ASN][1000 genomes]
rs1570847	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1749799	0.90[ASN][1000 genomes]
rs1813897	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2147875	0.92[ASN][1000 genomes]
rs2147876	0.92[ASN][1000 genomes]
rs2169198	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2274241	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2798993	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4948787	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948789	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7090750	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7899385	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7900414	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7915088	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs882902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs883400	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs898548	0.99[ASN][1000 genomes]
rs898550	0.82[CEU][hapmap];0.85[TSI][hapmap]
rs912803	0.91[ASN][1000 genomes]
rs9732790	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs984000	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1813245	GPRIN2	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44401200-44409200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:44405200-44407800	Enhancers	Fetal Brain Male	brain
3	chr10:44405600-44408200	Enhancers	Right Ventricle	heart
4	chr10:44405800-44407600	Enhancers	Fetal Stomach	stomach
5	chr10:44406000-44408800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:44406400-44407600	Enhancers	Stomach Smooth Muscle	stomach
7	chr10:44406400-44407600	Weak transcription	Spleen	Spleen
8	chr10:44406400-44409200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:44406400-44409400	Weak transcription	Left Ventricle	heart
10	chr10:44406400-44417800	Weak transcription	Right Atrium	heart
11	chr10:44406800-44421800	Weak transcription	Fetal Heart	heart

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