Variant report

Variant	rs882902
Chromosome Location	chr10:44405258-44405259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44404441..44407159-chr10:44407657..44409247,2	K562	blood:

Variant related genes	Relation type
ENSG00000236769	Chromatin interaction
ENSG00000227029	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10508874	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751347	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751348	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793506	0.87[EUR][1000 genomes]
rs10899948	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147900	0.90[ASN][1000 genomes]
rs1147902	0.90[ASN][1000 genomes]
rs1254744	0.90[ASN][1000 genomes]
rs1254855	0.90[ASN][1000 genomes]
rs1254857	0.90[ASN][1000 genomes]
rs1254858	0.90[ASN][1000 genomes]
rs1254859	0.90[ASN][1000 genomes]
rs1303233	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1325487	0.90[ASN][1000 genomes]
rs1570847	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1749799	0.89[ASN][1000 genomes]
rs1813245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1813897	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2147875	0.91[ASN][1000 genomes]
rs2147876	0.91[ASN][1000 genomes]
rs2169198	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274241	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2798993	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4948787	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948789	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7090750	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7899385	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7900414	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915088	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs883400	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs898548	0.99[ASN][1000 genomes]
rs898550	0.82[CEU][hapmap]
rs912803	0.90[ASN][1000 genomes]
rs9732790	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs984000	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44395000-44406200	Weak transcription	Esophagus	oesophagus
2	chr10:44400400-44406400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:44401200-44409200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:44401600-44405600	Weak transcription	NHLF	lung
5	chr10:44402000-44405600	Weak transcription	Spleen	Spleen
6	chr10:44402200-44405400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:44402200-44405600	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:44402400-44405400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:44402400-44405400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:44402400-44405400	Weak transcription	Left Ventricle	heart
11	chr10:44402400-44405400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:44402400-44405400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:44402400-44405600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:44402400-44405600	Weak transcription	Fetal Lung	lung
15	chr10:44402400-44405600	Weak transcription	Right Ventricle	heart
16	chr10:44402400-44405600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:44402400-44405600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:44402400-44405600	Weak transcription	HSMMtube	muscle
19	chr10:44402400-44405800	Weak transcription	Psoas Muscle	Psoas
20	chr10:44402600-44405800	Weak transcription	Fetal Stomach	stomach
21	chr10:44403200-44405600	Weak transcription	Fetal Kidney	kidney
22	chr10:44403400-44405800	Weak transcription	Ovary	ovary
23	chr10:44404800-44407400	Enhancers	Fetal Muscle Leg	muscle
24	chr10:44405000-44406600	Enhancers	NHDF-Ad	bronchial
25	chr10:44405000-44406800	Enhancers	Fetal Heart	heart
26	chr10:44405200-44406000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:44405200-44406400	Enhancers	Right Atrium	heart
28	chr10:44405200-44407000	Enhancers	Adipose Nuclei	Adipose
29	chr10:44405200-44407800	Enhancers	Fetal Brain Male	brain

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