Variant report

Variant	rs1147900
Chromosome Location	chr10:44394568-44394569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44387546..44389292-chr10:44394424..44396340,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10508874	0.90[ASN][1000 genomes]
rs10751347	0.90[ASN][1000 genomes]
rs10751348	0.90[ASN][1000 genomes]
rs10899948	0.90[ASN][1000 genomes]
rs1147902	0.84[ASN][1000 genomes]
rs1254744	0.84[ASN][1000 genomes]
rs1254855	0.84[ASN][1000 genomes]
rs1254857	0.84[ASN][1000 genomes]
rs1254858	0.84[ASN][1000 genomes]
rs1254859	0.84[ASN][1000 genomes]
rs1303233	0.90[ASN][1000 genomes]
rs1325487	0.84[ASN][1000 genomes]
rs1570847	0.90[ASN][1000 genomes]
rs1749799	0.82[ASN][1000 genomes]
rs1813245	1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs1813897	0.85[ASN][1000 genomes]
rs2147875	0.83[ASN][1000 genomes]
rs2147876	0.83[ASN][1000 genomes]
rs2169198	0.90[ASN][1000 genomes]
rs2274241	0.90[ASN][1000 genomes]
rs2798993	0.95[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs4948787	0.90[ASN][1000 genomes]
rs4948789	0.89[ASN][1000 genomes]
rs7090750	0.90[ASN][1000 genomes]
rs7899385	0.91[ASN][1000 genomes]
rs7900414	0.90[ASN][1000 genomes]
rs7915088	0.90[ASN][1000 genomes]
rs882902	0.95[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs883400	0.91[ASN][1000 genomes]
rs898548	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs912803	0.84[ASN][1000 genomes]
rs9732790	0.90[ASN][1000 genomes]
rs984000	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44387800-44394600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:44388800-44397600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:44389000-44394800	Weak transcription	Fetal Kidney	kidney
4	chr10:44392400-44402000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:44393600-44395000	Enhancers	Gastric	stomach
6	chr10:44393600-44395800	Enhancers	Adipose Nuclei	Adipose
7	chr10:44393800-44396000	Enhancers	Right Atrium	heart
8	chr10:44393800-44396400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:44394000-44395000	Enhancers	Esophagus	oesophagus
10	chr10:44394000-44395000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr10:44394000-44395200	Enhancers	Fetal Heart	heart
12	chr10:44394000-44395200	Enhancers	Left Ventricle	heart
13	chr10:44394000-44395400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:44394000-44395400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:44394000-44395400	Enhancers	NHDF-Ad	bronchial
16	chr10:44394000-44396000	Enhancers	Spleen	Spleen
17	chr10:44394000-44397800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:44394200-44394600	Enhancers	Fetal Stomach	stomach
19	chr10:44394200-44395000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:44394200-44395200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:44394200-44395200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr10:44394200-44395400	Enhancers	Osteobl	bone
23	chr10:44394200-44397600	Enhancers	Fetal Muscle Leg	muscle
24	chr10:44394400-44394600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:44394400-44394600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:44394400-44394600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
27	chr10:44394400-44395000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:44394400-44395000	Enhancers	Placenta Amnion	Placenta Amnion
29	chr10:44394400-44395200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:44394400-44395200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:44394400-44395200	Enhancers	Brain Cingulate Gyrus	brain
32	chr10:44394400-44395200	Enhancers	Duodenum Mucosa	Duodenum
33	chr10:44394400-44395400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr10:44394400-44395800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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