Variant report

Variant	rs2147876
Chromosome Location	chr10:44418600-44418601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10508874	0.91[ASN][1000 genomes]
rs10751347	0.91[ASN][1000 genomes]
rs10751348	0.91[ASN][1000 genomes]
rs10899948	0.91[ASN][1000 genomes]
rs1147900	0.83[ASN][1000 genomes]
rs1147902	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1254744	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1254855	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1254857	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1254858	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1254859	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1303233	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1325487	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1570847	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1749798	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1749799	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1813245	0.92[ASN][1000 genomes]
rs1813897	0.90[ASN][1000 genomes]
rs2147875	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2169198	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2274241	0.92[ASN][1000 genomes]
rs2798993	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4948787	0.91[ASN][1000 genomes]
rs4948789	0.91[ASN][1000 genomes]
rs7090750	0.91[ASN][1000 genomes]
rs7899385	0.91[ASN][1000 genomes]
rs7900414	0.91[ASN][1000 genomes]
rs7915088	0.90[ASN][1000 genomes]
rs882902	0.91[ASN][1000 genomes]
rs883400	0.91[ASN][1000 genomes]
rs898548	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs912803	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9732790	0.92[ASN][1000 genomes]
rs984000	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44406800-44421800	Weak transcription	Fetal Heart	heart
2	chr10:44408200-44424000	Weak transcription	Right Ventricle	heart
3	chr10:44417600-44418600	Enhancers	Spleen	Spleen
4	chr10:44417600-44419400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr10:44418200-44418600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
6	chr10:44418200-44424000	Weak transcription	Left Ventricle	heart
7	chr10:44418600-44422600	Weak transcription	Spleen	Spleen

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