Variant report

Variant	rs17499732
Chromosome Location	chr4:82283404-82283405
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10001235	0.80[AFR][1000 genomes]
rs10488936	0.91[EUR][1000 genomes]
rs11723619	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11725731	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11732408	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11938641	0.86[EUR][1000 genomes]
rs1452374	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1473160	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17005118	0.98[ASN][1000 genomes]
rs17427571	0.97[EUR][1000 genomes]
rs17499829	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17499843	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17500149	0.81[ASN][1000 genomes]
rs1878528	0.85[EUR][1000 genomes]
rs1975474	0.81[EUR][1000 genomes]
rs2034629	0.93[EUR][1000 genomes]
rs2058368	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2109662	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2839753	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs34347934	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4101929	0.80[AFR][1000 genomes]
rs41501452	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs41515854	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56075827	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57222629	0.83[EUR][1000 genomes]
rs58877260	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59498284	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61371439	0.85[EUR][1000 genomes]
rs62302352	0.96[EUR][1000 genomes]
rs62303570	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6535240	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6812825	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6813437	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6824784	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs725826	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7656390	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7658313	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7669368	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7685840	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7696324	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7698086	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7698361	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7699396	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7699600	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829985	chr4:82199328-82353656	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82278800-82283600	Enhancers	NHDF-Ad	bronchial
2	chr4:82280600-82287200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:82281000-82287200	Weak transcription	NHLF	lung
4	chr4:82282800-82287000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:82283200-82283600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:82283200-82284400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:82283200-82284800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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