Variant report

Variant	rs2839753
Chromosome Location	chr4:82287250-82287251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10006067	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11722445	0.90[EUR][1000 genomes]
rs11723613	0.93[EUR][1000 genomes]
rs11723619	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11725731	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11732408	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1377057	0.93[EUR][1000 genomes]
rs1443541	0.81[EUR][1000 genomes]
rs1452365	0.90[EUR][1000 genomes]
rs1452374	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1473160	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17005118	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17427459	0.84[EUR][1000 genomes]
rs17427571	0.82[CEU][hapmap]
rs17499327	0.93[EUR][1000 genomes]
rs17499732	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17499829	0.96[ASN][1000 genomes]
rs17499843	0.96[ASN][1000 genomes]
rs17500149	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2011962	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2034632	0.93[EUR][1000 genomes]
rs2058368	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2109662	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3098972	0.81[EUR][1000 genomes]
rs3098973	0.81[EUR][1000 genomes]
rs34347934	0.88[AMR][1000 genomes]
rs41501452	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs41515854	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4463061	0.90[EUR][1000 genomes]
rs56075827	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58877260	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59498284	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60825648	0.91[EUR][1000 genomes]
rs62302314	0.89[EUR][1000 genomes]
rs62303570	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6812825	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6824784	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs725826	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7656390	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7658313	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7669368	0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7685840	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7696324	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7698086	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7698361	0.86[ASN][1000 genomes]
rs7699396	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7699600	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829985	chr4:82199328-82353656	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82287200-82287400	Flanking Active TSS	NHDF-Ad	bronchial
2	chr4:82287200-82287600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:82287200-82287600	Enhancers	Fetal Lung	lung
4	chr4:82287200-82287800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:82287200-82287800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:82287200-82288000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:82287200-82288000	Enhancers	NHLF	lung

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