Variant report
Variant | rs17427459 |
---|---|
Chromosome Location | chr4:82229211-82229212 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10006067 | 0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10488936 | 0.91[ASN][1000 genomes] |
rs11722445 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs11723613 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11723619 | 0.84[EUR][1000 genomes] |
rs11725731 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs11732408 | 0.85[ASN][1000 genomes] |
rs11938641 | 0.87[ASN][1000 genomes] |
rs1377057 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1400746 | 0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs1443541 | 0.81[ASN][1000 genomes] |
rs1452365 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1467206 | 0.81[ASN][1000 genomes] |
rs1473160 | 0.84[ASN][1000 genomes] |
rs1517550 | 0.85[ASN][1000 genomes] |
rs1517554 | 0.82[ASN][1000 genomes] |
rs1568201 | 0.84[ASN][1000 genomes] |
rs1662837 | 0.85[ASN][1000 genomes] |
rs1662838 | 0.85[ASN][1000 genomes] |
rs1662839 | 0.84[ASN][1000 genomes] |
rs1662840 | 0.85[ASN][1000 genomes] |
rs1662842 | 0.85[ASN][1000 genomes] |
rs1662843 | 0.85[ASN][1000 genomes] |
rs1662844 | 0.84[ASN][1000 genomes] |
rs1662846 | 0.82[ASN][1000 genomes] |
rs17005118 | 0.85[EUR][1000 genomes] |
rs1712374 | 0.84[ASN][1000 genomes] |
rs1712379 | 0.84[ASN][1000 genomes] |
rs17427571 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs17499327 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs17500149 | 0.88[EUR][1000 genomes] |
rs17556750 | 0.86[ASN][1000 genomes] |
rs1878528 | 0.83[ASN][1000 genomes] |
rs1975474 | 0.82[ASN][1000 genomes] |
rs2011962 | 0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2034629 | 0.98[ASN][1000 genomes] |
rs2034632 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2058368 | 0.85[ASN][1000 genomes] |
rs2109662 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2197271 | 0.85[ASN][1000 genomes] |
rs2839753 | 0.84[EUR][1000 genomes] |
rs28661028 | 0.83[ASN][1000 genomes] |
rs2868182 | 0.84[ASN][1000 genomes] |
rs3098970 | 0.85[ASN][1000 genomes] |
rs3098972 | 0.82[ASN][1000 genomes] |
rs3098973 | 0.82[ASN][1000 genomes] |
rs3114136 | 0.85[ASN][1000 genomes] |
rs3114140 | 0.85[ASN][1000 genomes] |
rs34347934 | 0.87[ASN][1000 genomes] |
rs41501452 | 0.87[ASN][1000 genomes] |
rs41515854 | 0.88[ASN][1000 genomes] |
rs4463061 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs56075827 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs57222629 | 0.87[ASN][1000 genomes] |
rs58877260 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs59498284 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs60825648 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs61371439 | 0.87[ASN][1000 genomes] |
rs62302275 | 0.81[ASN][1000 genomes] |
rs62302285 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs62302286 | 0.85[ASN][1000 genomes] |
rs62302305 | 0.84[ASN][1000 genomes] |
rs62302308 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs62302314 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs62302352 | 0.94[ASN][1000 genomes] |
rs62303570 | 0.81[ASN][1000 genomes] |
rs6535240 | 0.87[ASN][1000 genomes] |
rs6812825 | 0.85[ASN][1000 genomes] |
rs6813437 | 0.89[ASN][1000 genomes] |
rs6824784 | 0.85[ASN][1000 genomes] |
rs710835 | 1.00[JPT][hapmap] |
rs710841 | 0.81[ASN][1000 genomes] |
rs725826 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs7656390 | 0.84[EUR][1000 genomes] |
rs7658313 | 0.81[ASN][1000 genomes] |
rs7661369 | 0.85[ASN][1000 genomes] |
rs7669368 | 0.84[ASN][1000 genomes] |
rs7685840 | 0.84[EUR][1000 genomes] |
rs7696324 | 0.85[ASN][1000 genomes] |
rs7698086 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7699396 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7699600 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs788855 | 1.00[JPT][hapmap] |
rs788857 | 0.81[ASN][1000 genomes] |
rs788861 | 1.00[JPT][hapmap] |
rs994014 | 0.82[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv999729 | chr4:81802554-82627820 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
2 | nsv537156 | chr4:81802554-82627820 | Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
3 | nsv829985 | chr4:82199328-82353656 | Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:82227800-82230000 | Enhancers | Fetal Brain Male | brain |
2 | chr4:82228600-82229800 | Enhancers | Fetal Brain Female | brain |
3 | chr4:82229200-82229600 | Enhancers | Fetal Lung | lung |